Tutorials

These tutorials walk through the two analysis stages of the Deep Visual Proteomics protocol. Each page embeds a Jupyter notebook with its stored outputs.

Setup

This document walks you through on how to setup a runtime environment that can execute the provided tutorials.

• Setup

Image analysis

The image-analysis tutorial covers a typical DVP imaging workflow: cell segmentation from unspecific cytosolic and nuclear stains, feature extraction, segmentation quality control, and threshold-based cell classification.

• Process an image

Proteomics analysis

The proteomics-analysis tutorial covers the reanalysis of minibulk proteomics data.

• Proteomics minibulk analysis