Setup#

  1. Clone this repository

git clone https://github.com/MannLabs/dvp-protocol-code.git
# go into the repository
cd dvp-protocol-code

  1. Create a suitable python environment

conda create -n dvp python=3.13 -y

# For image analysis
pip install -r requirements/requirements_image.txt

# For proteomics data analysis
pip install -r requirements/requirements_proteomics.txt

  1. Download the data

Important

Careful! The utilized image is ~5GB large.

cd data/
bash download.sh